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2009.104: A systematic survey of the response of a model NF-κB signalling pathway to TNFα stimulation

2009.104: Yunjiao Wang, Pawel Paszek, Caroline A. Horton, Yue Hong, Michael R. H. White, Douglas B. Kell, Mark R. Muldoon and David S. Broomhead (2012) A systematic survey of the response of a model NF-κB signalling pathway to TNFα stimulation. Journal of Theoretical Biology, 297. pp. 137-147. ISSN 0022-5193

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DOI: 10.1016/j.jtbi.2011.12.014


White's lab established that strong, continuous stimulation with tumour necrosis factor-α (TNFα) can induce sustained oscillations in the subcellular localisation of the transcription factor nuclear factor κB (NF-κB). But the intensity of the TNFα signal varies substantially, from picomolar in the blood plasma of healthy organisms to nanomolar in diseased states. We report on a systematic survey using computational bifurcation theory to explore the relationship between the intensity of TNFα stimulation and the existence of sustained NF-κB oscillations. Using a deterministic model developed by Ashall et al. in 2009, we find that the system's responses to TNFα are characterised by a supercritical Hopf bifurcation point: above a critical intensity of TNFα the system exhibits sustained oscillations in NF-κB localisation. For TNFα below this critical value, damped oscillations are observed. This picture depends, however, on the values of the model's other parameters. When the values of certain reaction rates are altered the response of the signalling pathway to TNFα stimulation changes: in addition to the sustained oscillations induced by high-dose stimulation, a second oscillatory regime appears at much lower doses. Finally, we define scores to quantify the sensitivity of the dynamics of the system to variation in its parameters and use these scores to establish that the qualitative dynamics are most sensitive to the details of NF-κB mediated gene transcription.

Item Type:Article
Uncontrolled Keywords:NF-κB signalling pathway, oscillations, Hopf bifurcation, parameter sensitivity analysis
Subjects:MSC 2000 > 34 Ordinary differential equations
MSC 2000 > 37 Dynamical systems and ergodic theory
MSC 2000 > 92 Biology and other natural sciences
MIMS number:2009.104
Deposited By:Dr Mark Muldoon
Deposited On:24 January 2012

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