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Items submitted by Dr Mark Muldoon

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Number of items submitted by this user: 68

2005.3: R. A. Clement, J. P. Whittle, M. R. Muldoon, R. V. Abadi, D. S. Broomhead and O. Akman (2002) Characterisation of congenital nystagmus waveforms in terms of periodic orbits. Vision Research, 42 (17). pp. 2123-2130. ISSN 0042-6989

2005.4: K. Berthelot, M. Muldoon, L. Rajkowitsch, J. Hughes and J. E. G. McCarthy (2004) Dynamics and processivity of 40S ribosome scanning on mRNA in yeast. Molecular Microbiology, 51 (4). pp. 987-1002. ISSN 0950-382X

2005.5: D. S. Broomhead, J. Huke and M. R. Muldoon (1992) Linear Filters and Non-linear Systems. Journal of the Royal Statistical Society. Series B, 54 (2). pp. 373-382. ISSN 1369-7412

2005.1: D. S. Broomhead, J. P. Huke, M. R. Muldoon and J. Stark (2004) Iterated Function System Models of Digital Channels. Proceedings of the Royal Society of London, Series A, 460. pp. 3123-3142. ISSN 1364-5021

2005.13: M. R. Muldoon, D. S. Broomhead, J. P. Huke and R. Hegger (1998) Delay embedding in the presence of dynamical noise. Dynamics and Stability of Systems, 13 (2). pp. 175-186. ISSN 0268-1110

2005.14: D. S. Broomhead, J. P. Huke and M. R. Muldoon (1999) Codes for spread spectrum applications generated using chaotic dynamical systems. Dynamics and Stability of Systems, 14 (1). pp. 95-105. ISSN 0268-1110

2005.15: M. J. Conyon and M. R. Muldoon (2005) The Small World Network Structure of Boards of Directors.

2005.24: M. R. Muldoon, R. S. MacKay, J. P. Huke and D. S. Broomhead (1993) Topology from time series. Physica D, 65 (1-2). pp. 1-16. ISSN 0167-2789

2005.30: Xia Jin, Caroline G. P. Roberts, Douglas F. Nixon, Yunzhen Cao, David D. Ho, Bruce D. Walker, Mark Muldoon, Bette T. M. Korber, Richard A. Koup and the ARIEL Project Investigators (1998) Longitudinal and Cross-Sectional Analysis of Cytotoxic T Lymphocyte (CTL) Responses and their Relationship to Vertical HIV Transmission. Journal of Infectious Diseases, 178 (5). pp. 1317-1326. ISSN 0022-1899

2006.7: Karina Yusim, Martine Peters, Oliver Pybus, Tanmoy Bhattacharya, Eric Delaporte, Claire Mulanaga, Mark Muldoon, James Theiler and Bette Korber (2001) Using human immunodeficiency virus type 1 sequences to infer historical features of the acquired immune deficiency syndrome epidemic and human immunodeficiency virus evolution. Philosophical Transactions of the Royal Society of London, B, 356 (1410). pp. 855-866. ISSN 0962-8436

2006.18: D. S. Broomhead, R. Jones and Gregory P. King (1987) Topological dimension and local coordinates from time series data. Journal of Physics A, 20 (9). L563-L569. ISSN 0305-4470

2006.19: Trevor Platt, David S. Broomhead, Shubha Sathyendranath, Andrew M. Edwards and Eugene J. Murphy (2003) Phytoplankton biomass and residual nitrate in the pelagic ecosystem. Proceedings of the Royal Society of London, Series A, 459 (2033). pp. 1063-1073. ISSN 1471-2946

2006.17: J. Stark, D. S. Broomhead, M. E. Davies and J. Huke (2003) Delay Embeddings for Forced Systems. II. Stochastic Forcing. Journal of Nonlinear Science, 13 (6). pp. 519-577. ISSN 1432-1467

2006.20: D. S. Broomhead and Nikita Sidorov (2004) Mutual information and capacity of a linear digital channel. Nonlinearity, 17 (6). pp. 2203-2223. ISSN 1361-6544

2006.23: O. E. Akman, D. S. Broomhead, R. V. Abadi and R. A. Clement (2005) Eye movement instabilities and nystagmus can be predicted by a nonlinear dynamics model of the saccadic system. Journal of Mathematical Biology, 51 (6). pp. 661-694. ISSN 1432-1416

2006.22: D. S. Broomhead and M. J. Kirby (2005) Dimensionality Reduction Using Secant-Based Projection Methods: The Induced Dynamics in Projected Systems. Nonlinear Dynamics, 41 (1-3). pp. 47-67. ISSN 1573-269X

2006.21: D. S. Broomhead (1987) Fractals. In: A. J. M. Spencer, (eds). Proceedings of the Fifth International Symposium on Continuum Models of Discrete Systems, Nottingham, 14-20 July 1985. A.A. Balkema, Rotterdam, pp. 27-34. ISBN 9061916828

2006.26: J. P. Huke (2006) Embedding Nonlinear Dynamical Systems: A Guide to Takens' Theorem.

2006.28: Ozgur Akman (2003) Analysis of a nonlinear dynamics model of the saccadic system. PhD thesis, University of Manchester Institute of Science and Technology (UMIST).

2006.27: O. E. Akman, D. S. Broomhead, R. A. Clement and R. V. Abadi (2006) Nonlinear time series analysis of jerk congenital nystagmus.

2006.29: B. Korber, M. Muldoon, J. Theiler, F. Gao, R. Gupta, A. Lapedes, B. H. Hahn, S. Wolinsky and T. Bhattacharya (2000) Timing the Ancestor of the HIV-1 Pandemic Strains. Science, 288 (5472). pp. 1786-1796. ISSN 0036-8075

2006.62: D. S. Broomhead, R. A. Clement, M. R. Muldoon, J. P. Whittle, C. Scallan and R. V. Abadi (2000) Modelling of congenital nystagmus waveforms produced by saccadic system abnormalities. Biological Cybernetics, 82 (5). pp. 391-399. ISSN 0340-1200

2006.61: M. C. Readman, M. R. Muldoon, L. Reynolds, R. Morris, M. Bayliss, D. Wood and I. Stewart (2001) Control of free length when coiling a helical spring. IEE Proceedings-Control Theory and Applications, 148 (3). pp. 239-244. ISSN 1350-2379

2006.63: R. B. Van Dyke, B. T. Korber, E. Popek, C. Macken, S. M. Widmayer, A. Bardeguez, I. C. Hanson, A. Wiznia, K. Luzuriaga, R. R. Viscarello, S. Wolinsky and the Ariel Core Investigators (1999) The Ariel Project: A prospective cohort study of maternal-child transmission of human immunodeficiency virus type 1 in the era of maternal antiretroviral therapy. Journal of Infectious Diseases, 179 (2). pp. 319-328. ISSN 0022-1899

2006.64: R. S. MacKay and M. R. Muldoon (1993) Diffusing through spectres: ridge curves, ghost circles and a partition of phase space. Physics Letters A, 178 (3-4). pp. 245-250. ISSN 0375-9601

2006.58: R. A. Doney and A. E. Kyprianou (2006) Overshoots and undershoots of Lévy Processes.

2006.65: M. J. Conyon and M. R. Muldoon (2006) Ranking the Importance of Boards of Directors.

2006.66: Cynthia A. Derdeyn, Julie M. Decker, Frederic Bibollet-Ruche, John L. Mokili, Mark Muldoon, Scott A. Denham, Marintha L. Heil, Francis Kasolo, Rosemary Musonda, Beatrice H. Hahn, George M. Shaw, Bette T. Korber, Susan Allen and Eric Hunter (2004) Envelope-Constrained Neutralization-Sensitive HIV-1 After Heterosexual Transmission. Science, 303. pp. 2019-2022. ISSN 0036-8075

2006.67: Yunzhen Cao, Paul Krogstad, Bette T. Korber, Richard A. Koup, Mark Muldoon, Catherine Macken, Jia-Li Song, Zhanqun Jin, Jla-Qi Zhao, Sheila Clapp, Irvin S. Y. Chen, David D. Ho, Arthur J. Ammann and the Ariel Project Investigators (1997) Maternal HIV-1 viral load and vertical transmission of infection: The Ariel Project for the prevention of HIV transmission from mother to infant. Nature Medicine, 3 (5). pp. 549-552. ISSN 1078-8956

2009.55: N. Martin, R. Koup, R. Kaslow, A. A. Ammann, A. J. Ammann, D. Asthana, A. Baur, Y. Bryson, S. Clapp, S. DeLaurentis, T. Devine, M. Feinberg, J. E. Fitzgibbon, M. G. Fowler, E. M. Garratty, R. Geffin, A. Gonzaga, M. Gray, S. Hetherington, J. K. Jansen, R. A. Kaslow, A. Keller, M. E. Klotman, B. Korber, A. Louzao, K. Luzuriaga, C. Macken, B. Mathieson, G. McSherry, M. Muldoon, J. I. Mullins, K. Nielsen, J. Oleske, P. Palumbo, A. Petru, S. Plaeger, Y. Riviere, P. Rossi, G. Scott, J. L. Sullivan, S. H. Vermund, D. Wara, R. J. Winchester, C. Winkler and S. Zeegen (1996) Workshop on perinatally acquired human immuno-deficiency virus infection in long-term surviving children: A collaborative study of factors contributing to slow disease progression. Aids Research and Human Retroviruses, 12 (16). pp. 1565-1570. ISSN 0889-2229

2006.138: J. E. Forster, R. V. Abadi, M. Muldoon and I. C. Lloyd (2006) Grading infantile cataracts. Ophthalmic and Physiological Optics, 26 (4). pp. 372-379. ISSN 0275-5408

2006.202: Eric A. Weaver, Zhongjing Lu, Zenadio T. Camacho, Fatiha Moukdar, Hua-Xin Liao, Ben-Jiang Ma, Mark Muldoon, James Theiler, Gary J. Nabel, Norman L. Letvin, Bette T. Korber, Beatrice H. Hahn, Barton F. Haynes and Feng Gao (2006) Cross-Subtype T-Cell Immune Responses Induced by a Human Immunodeficiency Virus Type 1 Group M Consensus Env Immunogen. Journal of Virology, 80 (14). pp. 6745-6756. ISSN 0022-538X

2006.403: Xuejun Liu (2006) Microarray Data Analysis Using Probabilistic Methods. PhD thesis, The University of Manchester.

2005.15: M. J. Conyon and M. R. Muldoon (2006) The Small World of Corporate Boards. Journal of Business Finance and Accounting, 33 (9-10). pp. 1321-1343. ISSN 0306-686x

2007.6: Caroline J. Riley (2006) Reaction and Diffusion on the Sierpinski Gasket. PhD thesis, The University of Manchester.

2007.7: Carole Tham (2006) Stochastic Resonance in Vision: Models and Data. PhD thesis, The University of Manchester.

2007.11: Denise L. Kothe, Julie M. Decker, Yingying Li, Zhiping Weng, Frederic Bibollet-Ruche, Kenneth P. Zammit, Maraia G. Slazar, Yalu Chen, Jesus F. Salazar-Gonzalez, Zina Moldoveanu, Jiri Mestecky, Feng Gao, Barton F. Haynes, George M. Shaw, Mark Muldoon, Bette T. M. Korber and Beatrice H. Hahn (2007) Antigenicity and immunogenicity of HIV-1 consensus subtype B envelope glycoproteins. Virology, 360 (1). pp. 218-234. ISSN 0042-6822

2007.77: Hitesh Mistry (2007) Stochastic Modeling of Gene Regulatory Networks. PhD thesis, The University of Manchester.

2007.104: Ben Routley and Mark R. Muldoon (2007) Llama: an online microarray linear analysis tool.

2007.105: Ben Routley and Mark R. Muldoon (2007) Review: Practical Design and Analysis of 2-Colour cDNA Microarray Experiments.

2007.114: Yu-Dong Cai, Chi-Hung Jen, Jiang Qian, ZiLiang Qian and Mark Muldoon (2007) Prediction of regulatory networks: identification of transcription factor-target relationship from gene ontology information and gene expression data.

2007.110: Yu-Dong Cai and Mark Muldoon (2007) Metabolic Pathway Modeling by Using the Nearest Neighbor Algorithm.

2007.115: George Petrides (2006) Cryptographic Applications of Non-Commutative Algebraic Structures and Investigations of Nonlinear Recursions. PhD thesis, Manchester Institute for Mathematical Sciences, The University of Manchester.

2007.118: Rong Rong, S. Gnanakaran, Julie M. Decker, Frederic Bibollet-Ruche, Jesse Taylor, Jeffrey N. Sfakianos, John L. Mokili, Mark Muldoon, Joseph Mulenga, Susan Allen, Beatrice H. Hahn, George M. Shaw, Jerry L. Blackwell, Bette T. Korber, Eric Hunter and Cynthia A. Derdeyn (2007) Unique Mutational Patterns in the Envelope α2 Amphipathic Helix and Acquisition of Length in gp120 Hypervariable Domains Are Associated with Resistance to Autologous Neutralization of Subtype C Human Immunodeficiency Virus Type 1. Journal of Virology, 81 (11). pp. 5658-5668. ISSN 0022-538X

2007.136: Nicole Frahm, Daniel E. Kaufmann, Karina Yusim, Mark Muldoon, Can Kesmir, Caitlyn H. Linde, Will Fischer, Todd M. Allen, Bin Li, Ben H. McMahon, Kellie L. Faircloth, Hannah S. Hewitt, Elizabeth W. Mackey, Toshiyuki Miura, Ashok Khatri, Steven Wolinsky, Andrew McMichael, Robert K. Funkhouser, Bruce D. Walker, Christian Brander and Bette T. Korber (2007) Increased Sequence Diversity Coverage Improves Detection of HIV-Specific T Cell Responses. Journal of Immunology, 179 (10). pp. 6638-6650. ISSN 0022-1767

2006.134: M. J. Conyon and M. R. Muldoon (2007) Ownership and Control: A Small-World Analysis.

2006.65: M. J. Conyon and M. R. Muldoon (2008) Ranking the Importance of Boards of Directors.

2008.79: Sampa Santra, Bette T. Korber, Mark Muldoon, Dan H. Barouch, Gary J. Nabel, Feng Gao, Beatrice H. Hahn, Barton F. Haynes and Norman L. Letvin (2008) A centralized gene-based HIV-1 vaccine elicits broad cross-clade cellular immune responses in rhesus monkeys. Proceedings of the National Academy of Sciences of the USA, 105 (30). pp. 10489-10494. ISSN 0027-8424

2006.134: M. J. Conyon and M. R. Muldoon (2008) Ownership and Control: A Small-World Analysis. In: Joel A. C. Baum and Timothy J. Rowley, (eds). Network Strategy. Advances in Management Science (25). JAI Press, Emerald Publishing Group, UK, pp. 31-65. ISBN 978-0-7623-1442-3

2009.101: Rigmor C. Baraas, Janus J. Kulikowski and Mark R. Muldoon (2009) Elongated S-cone stimuli reveal the importance of the intermediate temporal filter.

2009.105: Yunjiao Wang, David S. Broomhead, Caroline A. Horton, Douglas B. Kell and Michael R. H. White (2009) Oscillations in the NF-κB Signaling Pathway.

2010.14: Jasmina Cehajic-Kapetanovic, Paul N. Bishop, Sidath Liyanage, Trevor King, Mark Muldoon and Ian M. Wearne (2010) A novel Ocular Anaesthetic Scoring System, OASS, tool to measure both motor and sensory function following local anaesthesia. British Journal of Ophthalmology, 94 (1). pp. 28-32. ISSN 0007-1161

2010.15: Andrew D. Isaac, Mark Muldoon, Keri A. Brown and Terence A. Brown (2010) Genetic analysis of wheat landraces enables the location of the first agricultural sites in Italy to be identified. Journal of Archaeological Science, 37 (5). pp. 950-956. ISSN 0305-4403

2009.101: Rigmor C. Baraas, Janus J. Kulikowski and Mark R. Muldoon (2010) Bar-like S-cone stimuli reveal the importance of an intermediate temporal filter. Journal of the Optical Society of America A, 27 (4). pp. 766-780. ISSN 1749-9097

2010.26: Dan H. Barouch, Kara L. O'Brien, Nathaniel L. Simmons, Sharon L. King, Peter Abbink, Lori F. Maxfield, Ying-Hua Sun, Annalena La Porte, Ambryice M. Riggs, Diana M. Lynch, Sarah L. Clark, Katherine Backus, James R. Perry, Michael S. Seaman, Angela Carville, Keith G. Mansfield, James J. Szinger, Will Fischer, Mark Muldoon and Bette Korber (2010) Mosaic HIV-1 vaccines expand the breadth and depth of cellular immune responses in rhesus monkeys. Nature Medicine, 16 (3). pp. 319-323. ISSN 1546-170X

2010.27: Sampa Santra, Hua-Xin Liao, Ruijin Zhang, Mark Muldoon, Sydeaka Watson, Will Fischer, James Theiler, James Szinger, Harikrishnan Balachandran, Adam Buzby, David Quinn, Robert J. Parks, Chun-Yen Tsao, Angela Carville, Keith G. Mansfield, George N. Pavlakis, Barbara K. Felber, Barton F. Haynes, Bette T. Korber and Norman L. Letvin (2010) Mosaic vaccines elicit CD8+ T lymphocyte responses that confer enhanced immune coverage of diverse HIV strains in monkeys. Nature Medicine, 16 (3). pp. 324-328. ISSN 1546-170X

2010.107: Mark Muldoon (2009) External Examiners. Mathematics Today. pp. 42-43.

2011.13: Jennifer L. Kirchherr, Jennifer Hamilton, Xiaozhi Lu, S. Gnanakaran, Mark Muldoon, Marcus Daniels, Webster Kasongo, Victor Chalwe, Chanda Mulenga, Lawrence Mwananyanda, Rosemary M. Musonda, Xing Yuan, David C. Montefiori, Bette T. Korber, Barton F. Haynes and Feng Gao (2011) Identification of amino acid substitutions associated with neutralization phenotype in the human immunodeficiency virus type-1 subtype C gp120. Virology, 409 (2). pp. 163-174.

2009.28: Yunjiao Wang, Pawel Paszek, Caroline A. Horton, Douglas B. Kell, Michael R. H. White, David S. Broomhead and Mark R. Muldoon (2011) Interactions among oscillatory pathways in NF-κB signalling. BMC Systems Biology, 5 (1). pp. 1-23. ISSN 1752-0509

2011.87: Mark R. Muldoon, David S. Broomhead and Jeremy P. Huke (1994) Delay reconstruction for multiprobe signals. In: IEE Colloquium on Exploiting Chaos in Signal Processing. IEE, London, 3/1-3/6.

2012.14: Mark C. Readman and Dimitrios Kalamatianos (2012) Cell Death: Linear Control Analysis of Eissing's Model.

2009.104: Yunjiao Wang, Pawel Paszek, Caroline A. Horton, Yue Hong, Michael R. H. White, Douglas B. Kell, Mark R. Muldoon and David S. Broomhead (2012) A systematic survey of the response of a model NF-κB signalling pathway to TNFα stimulation. Journal of Theoretical Biology, 297. pp. 137-147. ISSN 0022-5193

2012.68: Simon C. Bull, Mark R. Muldoon and Andrew J. Doig (2012) Maximising the Size of Non-Redundant Protein Datasets Using Graph Theory.

2012.75: Sampa Santra, Mark Muldoon, Sydeaka Watson, Adam Buzby, Harikrishnan Balachandran, Kevin R. Carlson, Linh Mach, Wing-Pui Kong, Krishna McKee, Zhi-Yong Yang, Srinivas S. Rao, John R. Mascola, Gary J. Nabel, Bette T, Korber and Norman L. Letvin (2012) Breadth of cellular and humoral immune responses elicited in rhesus monkeys by multi-valent mosaic and consensus immunogens. Virology, 248 (2). pp. 121-127. ISSN 0042-6822

2012.68: Simon C. Bull, Mark R. Muldoon and Andrew J. Doig (2013) Maximising the Size of Non-Redundant Protein Datasets Using Graph Theory. PLoS ONE, 8 (2012.68). e55484. ISSN 1932-6203

2013.24: Nicholas F Parrish, Feng Gao, Hui Li, Elena E Giorgi, Hannah J Barbian, Erica H Parrish, Lara Zajic, Shilpa S Iyer, Julie M Decker, Amit Kumar, Bhavna Hora, Anna Berg, Fangping Cai, Jennifer Hopper, Thomas N Denny, Hairao Ding, Christina Ochsenbauer, John C Kappes, Rachel P Galimidi, Anthony P Jr West, Pamela J Bjorkman, Craig B Wilen, Robert W Doms, Meagan O'Brien, Nina Bhardwaj, Persephone Borrow, Barton F Haynes, Mark Muldoon, James P Theiler, Bette Korber, George M Shaw and Beatrice H Hahn (2013) Phenotypic properties of transmitted founder HIV-1. PNAS, 110 (17). pp. 6626-6633. ISSN 1091-6490

2013.23: Hua-Xin Liao, Chun-Yen Tsao, S. Munir Alam, Mark Muldoon, Nathan Vandergrift, Ben-Jiang Ma, Xiaozhi Lu, Laura L Sutherland, Richard M. Scearce, Cindy Bowman, Robert Parks, Haiyan Chen, Julie H Blinn, Alan Lapedes, Sydeaka Watson, Shi-Mao Xia, Andrew Foulger, Beatrice H Hahn, George M Shaw, Ron Swanstrom, David C Montefiori, Feng Gao, Barton F Haynes and Bette Korber (2013) Antigenicity and Immunogenicity of Transmitted/Founder, Consensus, and Chronic Envelope Glycoproteins of Human Immunodeficiency Virus Type 1. Journal of Virology, 87 (8). pp. 4185-4201. ISSN 0022-538X

2014.22: Christopher Welshman (2014) Dimensionality Reduction for Dynamical Systems with Parameters. PhD thesis, The University of Manchester.