You are here: MIMS > EPrints
MIMS EPrints

Items submitted by Dr Kieran Smallbone

Click here to see user's record.

Number of items submitted by this user: 53

2008.80: K. Smallbone, E. Simeonidis, D.S. Broomhead and D.B. Kell (2007) Something from nothing: bridging the gap between constraint-based and kinetic modelling. FEBS Journal, 274 (21). pp. 5576-5585. ISSN 0014-2956

2008.81: C.J. Kelly, K. Smallbone and J.M. Brady (2008) Tumour glycolysis: the many faces of HIF. Journal of Theoretical Biology, 254 (2). pp. 508-513. ISSN 0022-5193

2008.89: M.J. Herrgård, N. Swainston, P. Dobson, W.B. Dunn, K.Y. Arga, M. Arvas, N. Blüthgen, S. Borger, R. Costenoble, M. Heinemann, M. Hucka, N. Le Novère, P Li, W. Liebermeister, M.L. Mo, A.P. Oliveira, D. Petranovic, S. Pettifer, E. Simeonidis, K. Smallbone, I. Spasić, D. Weichart, R. Brent, D.S. Broomhead, H.V. Westerhoff, B.I. Kırdar, M. Penttilä, E. Klipp, B.Ø. Palsson, U. Sauer, S.G. Oliver, P. Mendes, J. Nielsen and D.B. Kell (2008) A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology. Nature Biotechnology, 16. pp. 1155-1160. ISSN 1087-0156

2008.88: K. Smallbone, R.A. Gatenby and P.K. Maini (2008) Mathematical modelling of tumour acidity. Journal of Theoretical Biology, 255 (1). pp. 106-112. ISSN 0022-5193

2009.13: Merim Bilalić, Kieran Smallbone, Peter McLeod and Fernand Gobet (2009) Why are (the best) women so good at chess? Participation rates and gender differences in intellectual domains. Proceedings of the Royal Society B - Biological Sciences, 276. pp. 1161-1165.

2009.20: C.J. Kelly, K. Smallbone, T. Roose and J.M. Brady (2007) A model to investigate the feasibility of FDG as a surrogate marker of hypoxia. In: ISBI 2007. 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 12-15 April 2007, Washington DC.

2009.23: Kieran Smallbone and Evangelos Simeonidis (2008) Flux balance analysis: A geometric perspective. Journal of Theoretical Biology. ISSN 0022-5193

2009.23: Kieran Smallbone and Evangelos Simeonidis (2009) Flux balance analysis: A geometric perspective. Journal of Theoretical Biology, 258 (2). pp. 311-315. ISSN 0022-5193

2009.42: Ettore Murabito, Evangelos Simeonidis, Kieran Smallbone and Jonathan Swinton (2009) Capturing the essence of a metabolic network: A flux balance analysis approach. Journal of Theoretical Biology.

2009.42: Ettore Murabito, Evangelos Simeonidis, Kieran Smallbone and Jonathan Swinton (2009) Capturing the essence of a metabolic network: A flux balance analysis approach. Journal of Theoretical Biology. ISSN 0022-5193

2009.42: Ettore Murabito, Evangelos Simeonidis, Kieran Smallbone and Jonathan Swinton (2009) Capturing the essence of a metabolic network: A flux balance analysis approach. Journal of Theoretical Biology, 260 (3). pp. 445-452. ISSN 0022-5193

2009.93: Kieran Smallbone (2009) One lump or two?

2009.96: Kieran D Smallbone, Philip K Maini and Robert A Gatenby (2009) Episodic, transient systemic acidosis delays evolution of the malignant phenotype: Possible mechanism for cancer prevention by increased physical activity. Biology Direct.

2009.100: Marcus J. Tindall, Louise Dyson, Kieran Smallbone and Philip K. Maini (2009) Modelling acidosis and the cell cycle in multicellular tumour spheroids.

2009.99: Alexander G. Shaw, Robert J. Platt, Jennifer K. Withers, Nils Blüthgen, Kieran Smallbone and Dean A. Jackson (2009) A stochastic-hybrid Model of DNA replication in mammalian cells.

2009.102: Kieran Smallbone, Evangelos Simeonidis, Neil Swainston and Pedro Mendes (2009) Towards a genome-scale kinetic model of cellular metabolism. BMC Systems Biology.

2009.102: Kieran Smallbone, Evangelos Simeonidis, Neil Swainston and Pedro Mendes (2010) Towards a genome-scale kinetic model of cellular metabolism. BMC Systems Biology, 4. 6.

2009.96: Kieran D Smallbone, Philip K Maini and Robert A Gatenby (2010) Episodic, transient systemic acidosis delays evolution of the malignant phenotype: Possible mechanism for cancer prevention by increased physical activity. Biology Direct, 5 (22).

2010.45: Philip K Maini, Robert A Gatenby and Kieran Smallbone (2010) Modelling Aspects of Tumour Metabolism. In: International Congress of Mathematicians, 19-27 August 2010, Hyderabad, India.

2010.45: Philip K Maini, Robert A Gatenby and Kieran Smallbone (2010) Modelling Aspects of Tumour Metabolism. In: Proceedings. International Congress of Mathematicians, Hyderabad, India, pp. 3091-3104.

2010.82: Neil Swainston, Martin Golebiewski, Hanan L. Messiha, Naglys Malys, Renate Kania, Sylvestre Kengne, Olga Krebs, Saqib Mir, Heidrun Sauer-Danzwith, Kieran Smallbone, Andreas Weidemann, Ulrike Wittig, Douglas B. Kell, Pedro Mendes, Wolfgang Müller, Norman W. Paton and Isabel Rojas (2010) Enzyme kinetics informatics: from instrument to browser. FEBS Journal, 277. pp. 3769-3779.

2010.85: Evangelos Simeonidis, Ettore Murabito, Kieran Smallbone and Hans V. Westerhoff (2010) Why does yeast ferment? A flux balance analysis study. Biochemical Society Transactions, 38. pp. 1225-1229.

2011.27: Mark Muldoon, Jeremy Huke and Kieran Smallbone (2011) Dave Broomhead's 60th Birthday. Mathematics Today, 47 (2). pp. 68-69.

2011.35: Ettore Murabito, Kieran Smallbone, Jonathan Swinton, Hans V. Westerhoff and Ralf Steuer (2011) A probabilistic approach to identify putative drug targets in biochemical networks. Journal of the Royal Society Interface, 8 (59). pp. 880-895.

2011.76: Kieran Smallbone, Naglis Malys, Hanan L. Messiha, Jill A. Wishart and Evangelos Simeonidis (2011) Building a kinetic model of trehalose biosynthesis in Saccharomyces cerevisiae. In: Daniel Jameson, Malkhey Verma and Hans V. Westerhoff, (eds). Methods in Systems Biology. Methods in Enzymology, 500. Elsevier, pp. 355-370. ISBN 978-0-12-385118-5

2011.94: Pedro Mendes, Kieran Smallbone and Natalie Stanford (2011) Kinetic modelling of large-scale metabolic networks. In: Proceedings of the 9th International Conference on Computational Methods in Systems Biology. Institut Henri Poincaré, Paris, France. ISBN 978-1-4503-0817-5

2011.96: Oluwafemi Davies, Pedro Mendes, Kieran Smallbone and Naglis Malys (2011) Characterisation of multiple substrate-specific (d)ITP/(d)XTPase and modelling of deaminated purine nucleotide metabolism. BMB Reports, 44 (11).

2011.97: Natalie J. Stanford and Kieran Smallbone (2011) Kinetic modelling of metabolic pathways. The Bioinformatics Knowledgeblog.

2009.100: Marcus J. Tindall, Louise Dyson, Kieran Smallbone and Philip K. Maini (2011) Modelling acidosis and the cell cycle in multicellular tumour spheroids. Journal of Theoretical Biology.

2012.6: Natalie J. Stanford, Kieran Smallbone and Pedro Mendes (2012) Letting the flux define the kinetics: using a single steady state to predict network behaviour under diverse stress conditions.

2012.9: Dave Lee, Kieran Smallbone, Warwick B. Dunn, Ettore Murabito, Catherine L. Winder, Douglas B. Kell, Pedro Mendes and Neil Swainston (2012) Constraining flux balance analysis with genome-scale data.

2009.100: Marcus J. Tindall, Louise Dyson, Kieran Smallbone and Philip K. Maini (2012) Modelling acidosis and the cell cycle in multicellular tumour spheroids. Journal of Theoretical Biology, 298. pp. 107-115.

2012.51: Benjamin D Heavner, Kieran Smallbone, Brandon Barker, Pedro Mendes and Larry P Walker (2012) Yeast 5 – an Expanded Reconstruction of the Saccharomyces Cerevisiae Metabolic Network. BMC Systems Biology.

2012.53: Emma Mulliner, Kieran Smallbone and Vida Maliene (2012) An Assessment of sustainable housing affordability using a multiple criteria decision making method. Omega.

2011.96: Oluwafemi Davies, Pedro Mendes, Kieran Smallbone and Naglis Malys (2012) Characterisation of multiple substrate-specific (d)ITP/(d)XTPase and modelling of deaminated purine nucleotide metabolism. BMB Reports, 45 (4). pp. 259-264.

2012.57: Kieran Smallbone and Natalie J. Stanford (2012) Kinetic modelling of metabolic pathways: Application to serine biosynthesis. In: Hal S. Alper, (eds). Systems Metabolic Engineering: Methods and Protocols. Methods in Molecular Biology. Humana Press.

2012.9: Dave Lee, Kieran Smallbone, Warwick B. Dunn, Ettore Murabito, Catherine L. Winder, Douglas B. Kell, Pedro Mendes and Neil Swainston (2012) Improving metabolic flux predictions using absolute gene expression data. BMC Systems Biology.

2012.51: Benjamin D Heavner, Kieran Smallbone, Brandon Barker, Pedro Mendes and Larry P Walker (2012) Yeast 5 - an Expanded Reconstruction of the Saccharomyces Cerevisiae Metabolic Network. BMC Systems Biology, 6 (55).

2012.53: Emma Mulliner, Kieran Smallbone and Vida Maliene (2013) An assessment of sustainable housing affordability using a multiple criteria decision making method. Omega, 41 (2). pp. 270-279.

2012.9: Dave Lee, Kieran Smallbone, Warwick B. Dunn, Ettore Murabito, Catherine L. Winder, Douglas B. Kell, Pedro Mendes and Neil Swainston (2012) Improving metabolic flux predictions using absolute gene expression data. BMC Systems Biology, 6 (73).

2012.115: José M. Cañete-Valdeón, Roel Wieringa and Kieran Smallbone (2012) Mechanistic modelling of cancer: some reflections from software engineering and philosophy of science. Naturwissenschaften, 99. pp. 973-983.

2015.21: Kieran Smallbone and Yunjiao Wang (2015) Mathematising biology.

2015.52: Paul D. Dobson, Kieran Smallbone, Daniel Jameson, Evangelos Simeonidis, Karin Lanthaler, Pınar Pir, Chuan Lu, Neil Swainston, Warwick B. Dunn, Paul Fisher, Duncan Hull, Marie Brown, Olusegun Oshota, Natalie J. Stanford, Douglas B. Kell, Ross D. King, Stephen G. Oliver, Robert D. Stevens and Pedrp Mendes (2010) Further developments towards a genome-scale metabolic model of yeast. BMC Systems Biology, 4 (195).

2015.53: Neil Swainston, Kieran Smallbone, Pedro Mendes, Douglas B. Kell and Norman W. Paton (2011) The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks. Journal of Integrative Bioinformatics, 8 (2). 186.

2015.54: Benjamin D. Heavner, Kieran Smallbone, Nathan D. Price and Larry P. Walker (2013) Version 6 of the consensus yeast metabolic network refines biochemical coverage and improves model performance. Database, bat059.

2015.55: Ines Thiele, Neil Swainston, Ronan M.T. Fleming, Andreas Hoppe, Swagatika Sahoo, Maike K. Aurich, Hulda Haraldsdottir, Monica L. Mo, Ottar Rolfsson, Miranda D. Stobbe, Stefan G. Thorleifsson, Rasmus Agren, Christian Bölling, Sergio Bordel, Arvind K. Chavali, Paul D. Dobson, Warwick B. Dunn, Lukas Endler, David Hala, Michael Hucka, Daniel Jameson, Neema Jamshidi, Jon J. Jonsson, Nick Juty, Sarah Keating, Intawat Nookaew, Nicolas Le Novère, Naglis Malys, Alexander Mazein, Jason A. Papin, Nathan D. Price, Evgeni Selkov, Sr., Martin I. Sigurdsson, Evangelos Simeonidis, Nikolaus Sonnenschein, Kieran Smallbone, Antony Sorokin, Johannes H.G.M. van Beek, Dieter Weichart, Igor Goryanin, Jens Neilsen, Hans V. Westerhoff, Douglas B, Kell, Pedro M. Mendes and Bernhard Ø. Palsson (2013) A community-driven global reconstruction of human metabolism. Nature Biotechnology, 31 (5). pp. 419-425.

2015.56: Natalie J. Stanford, Timo Lubitz, Kieran Smallbone, Edda Klipp, Pedro Mendes and Wolfram Liebermeister (2013) Systematic construction of kinetic models from genome-scale metabolic networks. PLoS ONE, 8 (11). e79195.

2015.57: Kieran Smallbone, Hanan L. Messiha, Kathleen M. Carroll, Catherine L. Winder, Naglis Malys, Warwick B. Dunn, Ettore Murabito, Neil Swainston, Joseph O. Dada, Farid Khan, Pınar Pir, Evangelos Simeonidis, Irena Spasić, Jill Wishart, Dieter Weichart, Neil W. Hayes, Daniel Jameson, David S. Broomhead, Stephen G. Oliver, Simon J. Gaskell, John E.G. McCarthy, Norman W. Paton, Hans V. Westerhoff, Douglas B. Kell and Pedro Pendes (2013) A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes. FEBS Letters, 587 (17). pp. 2832-2841.

2015.58: Kieran Smallbone and Pedro Mendes (2013) Large-Scale Metabolic Models: From Reconstruction to Differential Equations. Industrial Biotechnology, 9 (4). pp. 179-184.

2015.59: Kieran Smallbone and Bernard M. Corfe (2014) A mathematical model of the colon crypt capturing compositional dynamic interactions between cell types. International Journal of Experimental Pathology, 95 (1). pp. 1-7.

2012.57: Kieran Smallbone and Natalie J. Stanford (2013) Kinetic modelling of metabolic pathways: Application to serine biosynthesis. In: Hal S. Alper, (eds). Systems Metabolic Engineering: Methods and Protocols. Methods in Molecular Biology, 985. Humana Press, pp. 113-121.

2015.60: Alejandro F. Villaverde, David Henriques, Kieran Smallbone, Sophia Bongard, Joachim Schmid, Damjan Cicin-Sain, Anton Crombach, Julio Saez-Rodriguez, Klaus Mauch, Eva Balsa-Canto, Pedro Mendes, Johannes Jaeger and Julio Banga (2015) BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology. BMC Systems Biology, 9 (8).

2015.61: Robert Gaschler, Johanna Progscha, Kieran Smallbone, Nilam Ram and Merim Bilalić (2014) Playing off the curve - testing quantitative predictions of skill acquisition theories in development of chess performance. Frontiers in Psychology, 5 (923).